📄️ MPUSP/snakemake-bacterial-riboseq
Bacterial-Riboseq: A Snakemake workflow for the analysis of riboseq data in bacteria.
📄️ MPUSP/snakemake-crispr-guides
A Snakemake workflow for the design of small guide RNAs (sgRNAs) for CRISPR applications.
📄️ epigen/mixscape_seurat
A Snakemake workflow and MrBiomics module for performing perturbation analyses of pooled (multimodal) CRISPR screens with sc/snRNA-seq read-out (scCRISPR-seq) powered by the R package Seurat's method Mixscape.
📄️ franciscozorrilla/metaGEM
An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
📄️ mrvollger/StainedGlass
Make colorful identity heatmaps of genomic sequence
📄️ snakemake-workflows/dna-seq-benchmark
A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM (syndip) or other custom datasets
📄️ snakemake-workflows/rna-seq-kallisto-sleuth
A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
📄️ snakemake-workflows/rna-seq-star-deseq2
RNA-seq workflow using STAR and DESeq2
📄️ zavolanlab/mirflowz
Snakemake workflow for the mapping and quantification of miRNAs and isomiRs from miRNA-Seq libraries.
📄️ zjnolen/PopGLen
Bioinformatics pipeline to process whole genome resequencing data and perform genotype likelihood based population genomic analyses using ANGSD and related softwares. Flexible to datasets that combine high/low coverage and historical/fresh samples.