Top workflows by stars
snakemake-workflows/rna-seq-star-deseq2
last update: 2025-01-01RNA-seq workflow using STAR and DESeq2.
MPUSP/snakemake-crispr-guides
last update: 2025-01-01A Snakemake workflow for the design of small guide RNAs (sgRNAs) for CRISPR applications.
MPUSP/snakemake-bacterial-riboseq
last update: 2025-01-01Bacterial-Riboseq: A Snakemake workflow for the analysis of riboseq data in bacteria.
franciscozorrilla/metaGEM
last update: 2025-01-01An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data.
epigen/mixscape_seurat
last update: 2025-01-01A Snakemake workflow and MrBiomics module for performing perturbation analyses of pooled (multimodal) CRISPR screens with sc/snRNA-seq read-out (scCRISPR-seq) powered by the R package Seurats method Mixscape.
snakemake-workflows/dna-seq-benchmark
last update: 2025-01-01A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM (syndip) or other custom datasets.
mrvollger/StainedGlass
last update: 2025-01-01Make colorful identity heatmaps of genomic sequence.
snakemake-workflows/rna-seq-kallisto-sleuth
last update: 2025-01-01A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
zavolanlab/mirflowz
last update: 2025-01-01Snakemake workflow for the mapping and quantification of miRNAs and isomiRs from miRNA-Seq libraries.
